Selected works:

Zhuo C#, Dong X#, Zhao X#, Wu W#, Zhou H, Feng J, Liu L, Feng M, He C* Hou Y*. Single-cell sequencing reveals the expansion and diversity of T cell subsets in bone marrow microenvironment of chronic myeloid leukemia. Genes & Diseases. 2025 Apr 4;12(5):101626.

Yao L#, Zhang X#, Li X#, Xu J#, Yang S, Li F, Chen W, Shan Y, Ren L, Zhuo C, Liang S, Chen L, Yin W, Liu H, Liu L, Feng M, Chen K*, Chen S*, He C*. circAFF2 promote the development of AML by binding to PML mRNA. Oncogene. 2025 May;44(18):1234-1244.

Dong X#, Chen K#, Chen W#, Wang J, Chang L, Deng J, Wei L, Han L*, Huang C*, He C*. circRIP: an accurate tool for identifying circRNA-RBP interactions, Briefings in Bioinformatics. 2022 Jul 18;23(4):bbac186.

Li J#, Chen K#, Dong X#, Xu Y, Sun Q, Wang H, Chen Z, Liu C, Liu R, Yang Z, Mei X, Zhang R, Chang L, Tian Z, Chen J, Liang K*, He C*, Luo M*. YTHDF1 promotes mRNA degradation via YTHDF1-AGO2 interaction and phase separation. Cell Proliferation. 2022 Jan;55(1):e13157.

Feng J#, Chen W#, Dong X#, Wang J, Mei X, Deng J, Yang S, Zhuo C, Huang X, Shao L, Zhang R, Guo J, Ma R, Liu J, Li F, Wu Y*, Han L*, He C*. CSCD 2.0: An integrated interactional database of cancer-specific circular RNA, Nucleic Acids Research. 2022 Jal 7;50(D1):D1179-D1183.

Liu X#, Chen W#, Fang Y#, Yang S, Chang L, Chen X, Ye H, Tang X, Zhong S, Zhang W, Dong Z*, Han L*, He C*. ADEIP: an integrated platform of age-dependent expression and immune profiles across human tissues. Briefings in Bioinformatics. 2021 Nov 5;22(6):bbab274.

Shao L#, Jiang GT#, Yang XL, Zeng ML, Cheng JJ, Kong S, Dong X, Chen TX, Han S, Yin J, Liu WH, He XH, He C*, Peng BW*. Silencing of circIgf1r plays a protective role in neuronal injury via regulating astrocyte polarization during epilepsy. FASEB J. 2021 Feb;35(2):e21330.

Xiao S#, Cao S#, Huang Q#, Xia L#, Deng M, Yang M, Jia G, Liu X, Shi J, Wang W, Li Y, Liu S, Zhu H, Tan K, Luo Q, Zhong M*, He C*, Xia L*. The RNA N(6)-methyladenosine modification landscape of human fetal tissues. Nature Cell Biology. 2019 May;21(5):651-661

Feng J*#, Chen K#, Dong X#, Xu X, Jin Y, Zhang X, Chen W, Han Y, Shao L, Gao Y, He C*. Genome-wide identification of cancer-specific alternative splicing in circRNA. Molecular Cancer. 2019 Mar 8;18(1):35

Lei L#, Xia S#, Liu D#, Li X#, Feng J, Zhu Y, Hu J, Xia L, Guo L, Chen F, Cheng H, Chen K, Hu H, Chen X, Li F, Zhong S, Mittal N, Yang G, Qian Z, Han L*, He C*. Genome-wide characterization of lncRNAs in acute myeloid leukemia. Briefings in Bioinformatics. 2018 Jul 20;19(4):627-635.

Xia S#, Feng J#, Chen K#, Ma Y, Gong J, Cai F, Jin Y, Gao Y, Xia L, Chang H, Wei L, Han L*, He C*. CSCD: A database for cancer-specific circular RNAs. Nucleic Acids Research. 2018 Jan 4;46(D1):D925-D929. ESI高被引

Xia S#, Feng J#, Lei L, Hu J, Xia L, Wang J, Xiang Y, Liu L, Zhong S, Han L*, He C*. Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes. Briefings in Bioinformatics. 2017 Nov 1;18(6):984-992. ESI高被引

He C*#, Hu H#, Wilson KD#, Wu H, Feng J, Xia S, Churko J, Qu K, Chang HY, Wu JC*. Systematic Characterization of Long Non-Coding RNAs Reveals the Contrasting Coordination of Cis- and Trans- Molecular Regulation in Human Fetal and Adult Heart. Circulation Cardiovascular Genetics. 2016 Apr;9(2):110-8.

Li Z#, Herold T#, He C#, Valk PJ, Chen P, Jurinovic V, Mansmann U, Radmacher MD, Maharry KS, Sun M, Yang X, Huang H, Jiang X, Sauerland MC, Büchner T, Hiddemann W, Elkahloun A, Neilly MB, Zhang Y, Larson RA, Le Beau MM, Caligiuri MA, Döhner K, Bullinger L, Liu PP, Delwel R, Marcucci G, Lowenberg B, Bloomfield CD, Rowley JD, Bohlander SK, Chen J*. Identification of a 24-gene prognostic signature that improves the European LeukemiaNet risk classification of acute myeloid leukemia: an international collaborative study. Journal of Clinical Oncology. 2013 Mar 20;31(9):1172-81.

He C#, Li Z#, Chen P#, Huang H, Hurst LD*, Chen J*. Young intragenic miRNAs are less coexpressed with host genes than old ones: implications of miRNA-host gene coevolution. Nucleic Acids Research. 2012 May;40(9):4002-12.

Mi S#, Li Z#, Chen P#,He C#, Cao D, Elkahloun A, Lu J, Pelloso LA, Wunderlich M, Huang H, Luo RT, Sun M, He M, Neilly MB, Zeleznik-Le NJ, Thirman MJ, Mulloy JC, Liu PP, Rowley JD*, Chen J*. Aberrant overexpression and function of the miR-17-92 cluster in MLL-rearranged acute leukemia. Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3710-5.